Date: 2021-04-22
Submitted by: Anonymous
Analysis type: Class I
None provided
Alleles: H-2-Db, H-2-Kb
Samples:mouse_liver.txt
Peptide Length Distribution (maximum of 30 mers)
| Sample | Peptide length | Total peptides | % |
|---|---|---|---|
| mouse_liver.txt | all lengths | 983 | 100 |
| 8-12 mers | 885 | 90 | |
| other | 98 | 10 |
NetMHCpan eluted ligand predictions made for all peptides between 8 & 12 mers, inclusive. Percent rank cutoffs for strong and weak binders: 0.5 and 2.0.
| Allele | Sample | Total peptides | Strong binders | Weak binders | Non-binders |
|---|---|---|---|---|---|
|
H-2-Db |
mouse_liver.txt | 885 | 250 (28.2%) | 82 (9.3%) | 553 (62.5%) |
|
H-2-Kb |
mouse_liver.txt | 885 | 317 (35.8%) | 105 (11.9%) | 463 (52.3%) |
NetMHCpan eluted ligand predictions made for all peptides between 8 & 12 mers, inclusive.
Predicted strong binders
Predicted weak binders
Predicted non-binders
- - # of peptides in sample
Clustering performed with all peptides between 8 & 12 mers, inclusive.
Percentages represent the percentage of peptides in a given group predicted to strongly bind the indicated allele.
Polar
Neutral
Basic
Acidic
Hydrophobic
mouse_liver.txt (peptides used: 885, outliers: 112)
Peptides in group: 390
H-2-Db: 2%,
H-2-Kb: 74%Peptides in group: 383
H-2-Kb: 8%
Peptides: 327
Peptides: 416
Peptides: 65
Peptides: 55
Peptides: 70
Peptides: 70